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Diagnostics & Biomarkers

Tests on tissue and blood that say what kind of cancer it is, what is driving it, and which drugs might work.

Pathology and immunohistochemistry remain the foundation. Layered on top: comprehensive genomic profiling (DNA and RNA), liquid biopsy for circulating tumour DNA, minimal residual disease monitoring, multi-cancer early detection, spatial and single-cell profiling, and AI read-outs of slides and scans.

Diagnostics & Biomarkers: how this front works · animated schematic, not to scale

Technologies

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Standard of care
Active surveillance

For low-risk prostate cancer, monitoring with PSA, MRI, and repeat biopsy instead of treating, because most such cancers never cause harm.

Emerging
BH3 profiling (functional apoptosis testing)

A lab test that measures how close a leukaemia cell is to self-destructing, and which survival protein is holding it back, to predict response to venetoclax-type drugs.

Established
Biobanking and tissue procurement

Freezers full of consented tumour samples with matched clinical data, which every biomarker and drug programme depends on.

Phase 2
Breath and volatile-organic-compound detection

Smelling cancer: measuring the trace chemicals a tumour puts into exhaled breath.

Established
Cancer variant knowledgebases and molecular tumour boards

Curated databases that say what each mutation means for treatment, and the expert meetings that use them to decide on therapy.

Established
cfDNA fragmentomics

Fragmentomics reads the sizes and positions of DNA fragments in blood, not the mutations. Cancer cells die messily and leave a recognisable fragmentation pattern.

Established
Circulating tumour HPV DNA (ctHPV-DNA)

A blood test that detects fragments of the virus DNA shed by HPV-positive throat cancers, to confirm diagnosis, track response, and catch recurrence early.

Established
Clinical NGS bioinformatics and variant interpretation

Software that turns raw sequencer output into a report of which mutations matter and which drugs they point to.

Standard of care
Companion diagnostics

The test that decides whether a specific drug is right for you, approved together with the drug.

Standard of care
Comprehensive genomic profiling

Sequencing hundreds of cancer genes at once from a biopsy to find the mutations a drug can target.

Concept
Continuous and near-continuous ctDNA monitoring

Instead of testing blood every three months, sampling constantly, so a relapse is caught the week it starts.

Emerging
ctDNA monitoring in lymphoma (PhasED-seq, clonoSEQ)

A blood test that tracks lymphoma DNA far below what a PET scan can see, so doctors can tell early who is cured and who will relapse.

Standard of care
Cystoscopy, blue-light imaging & TURBT

Cystoscopy and TURBT mean looking inside the bladder with a camera and shaving off tumours through the urethra. Blue-light dyes make flat tumours easier to see.

Standard of care
Cytogenetics and FISH

Looking at the leukaemia's chromosomes under a microscope, or lighting up specific gene breaks with fluorescent probes, to classify risk.

Established
Digital pathology & AI

Scanning microscope slides and letting software measure things a pathologist cannot see, including predictions of who will benefit from a treatment.

Established
DNA methylation profiling

Reading chemical tags on DNA that reveal a cell's identity, used to classify brain tumours and to detect cancer in blood.

Emerging
Functional (ex vivo) drug testing

Growing a patient's own cancer cells in a dish and testing drugs on them directly, instead of guessing from genetics.

Standard of care
Germline (hereditary) testing

A test of the DNA you were born with, to find inherited risk genes such as BRCA or Lynch syndrome.

Standard of care
Histology automation and IHC autostainers

Histology automation is the robots that process tissue into slides and stain them for biomarkers such as HER2 and PD-L1, the same way every time.

Standard of care
Histopathology & immunohistochemistry

Histopathology means looking at cancer cells under a microscope, and immunohistochemistry stains them for specific proteins. Together they are still the foundation of every diagnosis.

Standard of care
HPV DNA testing and self-sampling

A swab tested for the virus that causes cervical cancer, more accurate than the Pap smear and doable at home.

Standard of care
HRD & BRCA testing

Tests that reveal whether a tumour has a broken DNA repair system, which predicts response to PARP inhibitors and platinum.

Standard of care
Liquid biopsy (ctDNA)

A blood test that reads fragments of DNA shed by the tumour, so you can genotype or monitor cancer without a needle in the tumour.

Established
Long-read sequencing (PacBio, Oxford Nanopore)

Reading DNA in very long stretches, which reveals rearrangements and methylation that short-read machines miss.

Established
MRD / molecular residual disease testing

An ultra-sensitive blood test after surgery that detects leftover cancer months before a scan would.

Phase 3
Multi-cancer early detection (MCED)

A single blood test intended to screen for dozens of cancers at once, including ones with no screening today.

Standard of care
Multidisciplinary tumour boards

Regular meetings where surgeons, oncologists, radiologists, pathologists and others review each patient's case together and agree a plan; mandatory in many countries and associated with more guideline-concordant care.

Standard of care
Multiparameter flow cytometry MRD

Flow cytometry MRD counts leukaemia cells in the bone marrow one at a time by their surface proteins, down to one in ten thousand.

Standard of care
Multiparametric prostate MRI (PI-RADS)

An MRI before biopsy that finds the cancers that matter and lets many men skip biopsy altogether.

Emerging
New short-read sequencing platforms

Challengers to Illumina promising cheaper genomes, which matters for making tumour sequencing routine.

Standard of care
NGS-based MRD (clonoSEQ and molecular MRD)

Sequencing the unique genetic barcode of a patient's leukaemia to find one cancer cell in a million.

Established
Oncology EHR and real-world data platforms

Databases built from millions of real patient records, used to see how treatments work outside trials and to run studies without new trials.

Phase 2
Organoid-guided therapy at scale

Organoid-guided therapy means routinely growing a piece of each patient's tumour and testing drugs on it before choosing, rather than relying on genetics alone.

Emerging
PDAC organoid pharmacotyping

Growing a patient's pancreatic tumour as mini-organs in a dish and testing chemotherapies on them to pick the regimen most likely to work.

Standard of care
Pre-analytics: blood-collection tubes and tissue fixation

The tubes and fixatives that keep a sample stable between the patient and the lab. Unglamorous, but they decide whether a liquid biopsy or PD-L1 stain is trustworthy.

Emerging
Proteomics & phosphoproteomics

Measuring the proteins in a tumour, which is what drugs actually hit, rather than the genes that encode them.

Established
Proteomics instruments and affinity platforms

Machines that measure thousands of proteins at once from tissue or blood, used to find drug targets and early-detection markers.

Standard of care
Reference laboratories and companion-diagnostic testing

The big labs that run most biomarker tests, and the reagent makers whose stains decide who gets a drug.

Established
RNA sequencing & expression profiling

Measuring which genes a tumour is actively using, which reveals its subtype and finds gene fusions.

Established
Robotic and navigational bronchoscopy

A robot-guided flexible scope that reaches small lung nodules through the airways to biopsy them without a needle through the chest wall.

Emerging
Single-cell & spatial profiling

Reading the genes of each individual cell, and mapping where each cell sits in the tumour.

Emerging
Spatial biology instruments

Spatial biology instruments are machines that map which genes and proteins are active in each part of a tumour slice.

Emerging
Spatial-omics-guided treatment selection

Choosing treatment from a map of where each cell type sits in the tumour, not just from a list of its mutations.

Established
Telemedicine, teleoncology, and telepathology

Video visits, remote second opinions, and slides reviewed from afar, which let rural and low-resource patients reach specialists.

Standard of care
Thyroid nodule FNA, Bethesda cytology & molecular classifiers

Thyroid fine-needle aspiration takes a needle sample from a thyroid lump and grades it on a six-level scale; when the result is uncertain, a gene test on the same sample can often rule cancer out and avoid surgery.

Established
Whole-exome & whole-genome sequencing

Reading all the genes (exome) or the entire DNA (genome) of a tumour, rather than a chosen panel.

Established
Whole-slide scanners and image management

The scanners that turn glass slides into gigapixel images, and the software that stores and serves them, without which pathology AI cannot run.

Key papers

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rctNew England Journal of Medicine 2025changed practice
IMvigor011: using a blood test for leftover cancer to decide who gets immunotherapy after bladder surgery

After bladder removal, a blood test can now tell who needs immunotherapy and who can safely be spared it. This is the model for MRD-guided adjuvant therapy across cancers: treat the blood-positive, watch the blood-negative.

observationalNature Medicine 2023
GALAXY: tumour DNA in blood four weeks after bowel cancer surgery predicts relapse tenfold

The blood test stratifies risk far better than stage or pathology. It supports treating ctDNA-positive patients and suggests ctDNA-negative patients gain little from chemotherapy, but because treatment was not randomised the de-escalation claim needs the randomised trials that are now under way.

translationalNature 2023
TRACERx 421: the full-cohort picture of how lung cancer evolves and which subclones drive relapse

Relapse after surgery is driven by particular subclones that can be identified in the primary tumour and tracked in blood, which argues for evolution-aware adjuvant strategies. The pollution finding reframes carcinogenesis: some agents promote already-mutant cells rather than causing mutations.

rctNew England Journal of Medicine 2022changed practice
DYNAMIC: a blood test safely halved chemotherapy use after surgery for stage II colon cancer

For stage II colon cancer, where most patients are cured by surgery alone, a blood test can identify the minority who benefit from chemotherapy and spare everyone else its side effects. It does not yet prove that treating ctDNA-positive patients improves survival compared with not treating them.

basicCell 2018
TCGA Pan-Cancer Atlas: 10,000 tumours across 33 cancer types, classified by molecular features

Cancers are defined as much by the tissue they come from as by the mutations they carry, which is why the same drug can work in one organ and fail in another with the same mutation. TCGA is the shared public dataset behind most modern biomarkers and target discovery.

translationalNew England Journal of Medicine 2017
TRACERx first 100: tracking how lung cancers evolve, and how chromosomal chaos predicts relapse

Lung cancers keep evolving after they form, and it is ongoing chromosomal instability rather than the number of mutations that best predicts who will relapse. This gives a rationale for targeting the earliest (clonal) drivers and neoantigens and for tracking evolution in blood after surgery.

reviewScience 2013
Cancer genome landscapes: about 140 driver genes, and each tumour needs only a handful

There are not thousands of cancer genes, and any one patient's tumour is driven by only a few of them. That makes targeted sequencing panels sensible, but because most drivers are lost tumour suppressors, drugs exist for only a minority, which is why the same group turned to early detection.

translationalNew England Journal of Medicine 2012
Gerlinger: a single biopsy misses most of the mutations in a kidney tumour

A single biopsy is an incomplete picture of a patient's cancer. Truncal mutations shared by all cells (in kidney cancer, VHL) are the most reliable drug targets, whereas mutations in only some branches predict resistance. This is why liquid biopsy and multi-region sampling matter.

Connected

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technologies

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Active surveillanceBH3 profiling (functional apoptosis testing)Biobanking and tissue procurementBreath and volatile-organic-compound detectionCancer variant knowledgebases and molecular tumour boardscfDNA fragmentomicsCirculating tumour HPV DNA (ctHPV-DNA)Clinical NGS bioinformatics and variant interpretationCompanion diagnosticsComprehensive genomic profilingContinuous and near-continuous ctDNA monitoringctDNA monitoring in lymphoma (PhasED-seq, clonoSEQ)Cystoscopy, blue-light imaging & TURBTCytogenetics and FISHDigital pathology & AIDNA methylation profilingFunctional (ex vivo) drug testingGermline (hereditary) testingHistology automation and IHC autostainersHistopathology & immunohistochemistryHPV DNA testing and self-samplingHRD & BRCA testingLiquid biopsy (ctDNA)Long-read sequencing (PacBio, Oxford Nanopore)MRD / molecular residual disease testingMulti-cancer early detection (MCED)Multidisciplinary tumour boardsMultiparameter flow cytometry MRDMultiparametric prostate MRI (PI-RADS)New short-read sequencing platformsNGS-based MRD (clonoSEQ and molecular MRD)Oncology EHR and real-world data platformsOrganoid-guided therapy at scalePDAC organoid pharmacotypingPre-analytics: blood-collection tubes and tissue fixationProteomics & phosphoproteomicsProteomics instruments and affinity platformsReference laboratories and companion-diagnostic testingRNA sequencing & expression profilingRobotic and navigational bronchoscopySingle-cell & spatial profilingSpatial biology instrumentsSpatial-omics-guided treatment selectionTelemedicine, teleoncology, and telepathologyThyroid nodule FNA, Bethesda cytology & molecular classifiersWhole-exome & whole-genome sequencingWhole-slide scanners and image management

companies

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institutions

31

ideas

10

people

1

key papers

8