OnCo
key papersKey paper

The first PROTAC: a chimeric molecule that tags a protein for destruction

Crews and Deshaies built a two-headed molecule linking a ligand for the target protein MetAP-2 to a peptide recognised by an E3 ubiquitin ligase, and showed it induced ubiquitination and degradation of the target, founding targeted protein degradation.

The proteolysis-targeting chimera (Protac-1) joined ovalicin, which binds methionine aminopeptidase-2, to the IkappaBalpha phosphopeptide recognised by the SCF-beta-TRCP E3 ligase. In Xenopus egg extracts, Protac-1 recruited MetAP-2 to the ligase and triggered its ubiquitination and proteasomal degradation.

The paper established the principle that a bifunctional molecule can hijack the cell's own disposal machinery to eliminate a chosen protein, including proteins with no enzymatic activity to inhibit. Peptide-based PROTACs were poorly cell-permeable; the field became practical when all-small-molecule degraders using VHL and cereblon ligands appeared (Bondeson 2015; Winter 2015, dBET1 degrading BRD4 in vivo).

Degraders now include vepdegestrant (oestrogen receptor), ARV-110 and other androgen-receptor degraders, and the molecular glues (lenalidomide-class drugs) reinterpreted through the same mechanism.

Basic scienceHas not changed practice yet
Authors
Sakamoto KM, Kim KB, Kumagai A, Mercurio F, Crews CM, Deshaies RJ
Published
PNAS, 2001
What it found
  • Protac-1 induced ubiquitination and degradation of MetAP-2 in cell extracts by recruiting the SCF E3 ligase
  • Degradation required both halves of the chimera and an intact ubiquitin-proteasome pathway
  • Introduced the terminology and concept of proteolysis-targeting chimeras
  • Small-molecule successors (2015 onwards) achieved in vivo degradation of BRD4 and other targets at nanomolar potency
What it means

Instead of blocking a cancer protein, a drug can now remove it entirely, which works even for proteins without a druggable active site and can overcome resistance driven by target overexpression or mutation. Several degraders are in late-stage trials for breast and prostate cancer.

Be careful
  • The original molecule was a large peptide conjugate with no cell permeability; clinical degraders took 15 years
  • Degraders are large molecules with challenging oral bioavailability and pharmacokinetics
  • Ligase expression varies between tissues and tumours, and resistance via ligase loss has been documented
  • Clinical superiority over inhibitors has so far been modest in the first phase 3 readouts (for example vepdegestrant)

Connected

11top

Pages like this

not linked directly; found by shared links